Methods developed in our group:

  • Hybrid kinetic Monte-Carlo MD (kMC-MD) methods.
  • Coarse-Graining Methods (Dissipative Particle Dynamics).
  • Adaptive bias MD methods.
  • Replica-exchange MD methods
  • RNA- and DNA modeling techniques based on structural alphabets.


Further methods used:

  • DNA-, RNA-, and Protein Sequence analysis and alignment.
  • Methods for the structural classification of protein, DNA and RNA conformations.
  • Direct-Coupling Analysis (DCA) of proteins and RNA.
  • Molecular Dynamics simulations of proteins, DNA and RNA.